After a few months of looking for the cause of this noise I was finally able to find the problem and get it sorted. As I have mentioned above - I would hear clunk when taking a turn when driving over a bump or uneven road surface - anything that would contribute to more flex on the frame. Dealership kept telling me all suspensiuon components are in good shape. Replacing sway bar bushings and front end-links did not get rid of the noise, though I though it made it quiter originally. After spending hours here, as well as Xterra, Frontier and russian Pathfinder club forums I figured its worth to check the front body mounts (bushing that go between your frame and body on the very front). These are impossible to trouble-shoot unless you take them off, but I as I found out mine were damaged and were making metal on metal contact with the frame, causing the clunking noise. They were tightened to spec (65 lbs/ft) but there was a very small amount of rubber that got worn off on the part of the mount that fits inside the frame and it was impossible to see unless you remove them and take them apart. You can see the damaged area in the pictures. First pic has one mount intact and the other on its side and taken apart:

This picture is a close up of where the damage was found:

Both units required replacement and were about $60 from Courtesy. To replace them, you have to partially remove your fender liners, unscrew the bolts on both mounts to give you more play (I even loosened the second set of the body mounts back on the frame to give it more play. Once replaced, torque them to 65 lbs/ft and things will be quiet again. I was only able to find one thread on the NewX.org discussing this - guy replaced one of the mounts and it took care of the clunking. Russian Pathfinder owners seem to be more aware of this issue - must be due to their bad roads that wer them out quicker. I saw a lot of folks on Frontier site replacing bushings, end-links, even struts to come back to the same problem. If you have front end clunk and your suspension is in good shape and your sway bar bushings and ens-links are OK, this is your culprit. This would apply to Pathfinders, Frontiers and Xterra's.